Introduction | Background | Installation | S4 objects | DataTemporalMap | IGTProjection | Data pre-processing | Load the CSV input file | Transform the date column in 'Date' R format | Transform the ICD9-CM into PheWAS codes | Data analysis | Estimate data temporal map | Trim a DataTemporalMap object | Estimate IGT projections | Data visualization | Plot data temporal maps | Heatmap plot | Time series plot | Plot IGT projections | Visualize temporal trajectory | Export data for the Shiny app dashboard | Interpretation of temporal changes in IGT projections | Types of temporal changes | Example | Summary of EHRtemporalVariability available functions | Bibliography

queries Parameter Breakdown | Example 1: Built-in Intersection Query | Example 2: Built-In Elements Query | Example 3: Using Expression Parameter to Subset Intersection and Element Queries | Example 4: Creating Custom Queries on Set Elements and Attributes | Example 5: Applying a query legend | Example 6: Applying Everything at Once

Example 1: Alternative Input Formats | Example 2: Choosing the Top Largest Sets and Plot Formatting | Example 3: Choosing Specific Sets and Matrix Ordering | Example 4: Keeping Order of Sets When Using Sets Parameter | Example 5: Grouping of Intersections | Example 6: Displaying Empty Intersections

attribute.plots Parameter Breakdown | Example 1: Built-In Attribute Histogram | Example 2: Built-In Attribute Scatter Plot | Example 3: Creating a Custom Attribute Plot | Example 4: Applying Everything at Once | Example 5: Intersection Box Plots

set.metadata Parameter Breakdown | Example 1: Set Metadata Bar Plot | Example 2: Set Metadata Heat Map | Example 3: Set Metadata Boolean Heat Map | Example 4: Set Metadata Text | Example 5: Applying Metadata to the Matrix | Example 6: Multiple Metadata Plots At Once | Example 7: Metadata Plots, Queries, and Attribute Plots