Package: UpSetR 1.4.1

Nils Gehlenborg

UpSetR: A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting Sets

Creates visualizations of intersecting sets using a novel matrix design, along with visualizations of several common set, element and attribute related tasks (Conway 2017) <doi:10.1093/bioinformatics/btx364>.

Authors:Jake Conway [aut], Nils Gehlenborg [aut, cre]

UpSetR_1.4.1.tar.gz
UpSetR_1.4.1.zip(r-4.7)UpSetR_1.4.1.zip(r-4.6)UpSetR_1.4.1.zip(r-4.5)
UpSetR_1.4.1.tgz(r-4.6-any)UpSetR_1.4.1.tgz(r-4.5-any)
UpSetR_1.4.1.tar.gz(r-4.7-any)UpSetR_1.4.1.tar.gz(r-4.6-any)
UpSetR_1.4.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
UpSetR/json (API)

# Install 'UpSetR' in R:
install.packages('UpSetR', repos = c('https://hms-dbmi.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/hms-dbmi/upsetr/issues

On CRAN:

Conda:

ggplot2hidivelabupsetupsetrvisualization

15.73 score 837 stars 43 packages 7.5k scripts 33k downloads 319 mentions 7 exports 20 dependencies

Last updated from:d2dd1d9e9f. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK142
source / vignettesOK187
linux-release-x86_64OK132
macos-release-arm64OK106
macos-oldrel-arm64OK76
windows-develOK92
windows-releaseOK96
windows-oldrelOK103
wasm-releaseOK108

Exports:elementsfromExpressionfromListhistogramintersectsscatter_plotupset

Dependencies:clicpp11farverggplot2gluegridExtragtableisobandlabelinglifecycleplyrR6RColorBrewerRcpprlangS7scalesvctrsviridisLitewithr

Querying the Data
queries Parameter Breakdown | Example 1: Built-in Intersection Query | Example 2: Built-In Elements Query | Example 3: Using Expression Parameter to Subset Intersection and Element Queries | Example 4: Creating Custom Queries on Set Elements and Attributes | Example 5: Applying a query legend | Example 6: Applying Everything at Once
Rendered fromqueries.Rmdusingknitr::rmarkdown

Last update: 2016-11-01
Started: 2015-07-24

Basic Usage
Example 1: Alternative Input Formats | Example 2: Choosing the Top Largest Sets and Plot Formatting | Example 3: Choosing Specific Sets and Matrix Ordering | Example 4: Keeping Order of Sets When Using Sets Parameter | Example 5: Grouping of Intersections | Example 6: Displaying Empty Intersections
Rendered frombasic.usage.Rmdusingknitr::rmarkdown

Last update: 2016-10-18
Started: 2015-07-24

Attribute Plots
attribute.plots Parameter Breakdown | Example 1: Built-In Attribute Histogram | Example 2: Built-In Attribute Scatter Plot | Example 3: Creating a Custom Attribute Plot | Example 4: Applying Everything at Once | Example 5: Intersection Box Plots
Rendered fromattribute.plots.Rmdusingknitr::rmarkdown

Last update: 2016-10-17
Started: 2015-07-24

Incorporating Set Metadata
set.metadata Parameter Breakdown | Example 1: Set Metadata Bar Plot | Example 2: Set Metadata Heat Map | Example 3: Set Metadata Boolean Heat Map | Example 4: Set Metadata Text | Example 5: Applying Metadata to the Matrix | Example 6: Multiple Metadata Plots At Once | Example 7: Metadata Plots, Queries, and Attribute Plots
Rendered fromset.metadata.plots.Rmdusingknitr::rmarkdown

Last update: 2016-10-17
Started: 2016-03-17